STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP95606.1Nitroreductase. (172 aa)    
Predicted Functional Partners:
SFP95641.1
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.773
SFP74829.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
    
 0.706
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.637
SFQ37882.1
ABC-2 type transport system permease protein.
  
    0.552
SFQ39146.1
Flavin reductase like domain-containing protein.
  
 
 0.552
SFQ15087.1
Hypothetical protein; Belongs to the flavin oxidoreductase frp family.
  
     0.533
SFQ24289.1
cob(I)alamin adenosyltransferase.
    
 0.513
SFQ17077.1
NAD(P)H dehydrogenase (quinone); Belongs to the WrbA family.
  
 
 0.510
SFP61023.1
FMN adenylyltransferase /riboflavin kinase; Belongs to the ribF family.
    
  0.501
SFQ16462.1
2,4-dienoyl-CoA reductase.
  
 
  0.501
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.