STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ17881.1Hypothetical protein. (549 aa)    
Predicted Functional Partners:
SFQ42031.1
EDD domain protein, DegV family.
  0.998
SFP79698.1
EDD domain protein, DegV family.
  0.996
SFQ17904.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
  
 0.983
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
 
    0.675
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.624
polC
DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.605
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.518
SFQ17799.1
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
       0.450
SFQ17743.1
Hypothetical protein.
       0.448
SFP91218.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
 
  
 0.430
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.