STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ35647.1Signal transducer regulating beta-lactamase production, contains metallopeptidase domain. (632 aa)    
Predicted Functional Partners:
SFQ35667.1
Predicted transcriptional regulator.
 
 
 0.994
SFQ35857.1
Penicillinase repressor.
  
 
 0.583
SFQ35709.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.522
SFQ28078.1
Protein of unknown function (4846).
  
     0.463
SFQ16676.1
MerR family regulatory protein.
  
     0.448
SFP80533.1
Putative ABC transport system permease protein.
  
     0.426
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.