STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ40982.1Sugar phosphate isomerase/epimerase. (255 aa)    
Predicted Functional Partners:
SFQ12976.1
Hexulose-6-phosphate isomerase.
  
     0.644
SFQ40963.1
Predicted dehydrogenase.
  
 
  0.609
SFQ41005.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
    0.590
SFP82400.1
Predicted dehydrogenase.
  
 
  0.582
SFQ40897.1
Predicted dehydrogenase.
  
 
  0.559
SFQ41552.1
Predicted dehydrogenase.
  
 
  0.557
SFQ40918.1
Sugar phosphate isomerase/epimerase.
 
     0.521
SFQ19554.1
Hypothetical protein.
  
     0.493
SFQ40942.1
Sugar phosphate isomerase/epimerase.
 
     0.490
SFQ44230.1
Creatinine amidohydrolase.
  
 
  0.488
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.