STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ44404.1Probable transposase. (179 aa)    
Predicted Functional Partners:
SFQ28155.1
Hypothetical protein.
 
     0.976
SFP98572.1
Putative transposase.
  
     0.680
SFP87442.1
Putative transposase.
  
     0.664
SFP81844.1
Peptide/nickel transport system substrate-binding protein.
  
     0.655
SFQ00028.1
Rubrerythrin.
  
     0.523
SFP98604.1
Putative transposase.
 
    0.472
SFP85608.1
Transcriptional regulator, TetR family.
  
     0.464
SFQ28979.1
Predicted site-specific integrase-resolvase.
 
    0.446
SFP81815.1
Peptide/nickel transport system permease protein.
  
     0.428
SFP81791.1
Peptide/nickel transport system permease protein.
  
     0.426
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.