STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ46407.1Xylose isomerase-like TIM barrel. (133 aa)    
Predicted Functional Partners:
SFQ46421.1
Xylose isomerase-like TIM barrel.
     0.990
SFP62027.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
 
 
  0.903
xylB
Xylulokinase.
  
 
  0.615
SFP94627.1
Predicted N-acetyltransferase YhbS.
  
     0.566
xylB-2
Xylulokinase.
   
 
  0.548
SFQ24920.1
Xylulokinase; Belongs to the FGGY kinase family.
   
 
  0.548
SFQ38570.1
Gluconokinase; Belongs to the FGGY kinase family.
   
 
  0.548
SFQ46394.1
Hypothetical protein.
       0.535
SFQ32258.1
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
  
 
  0.519
SFQ14951.1
Sugar phosphate isomerase/epimerase.
  
     0.509
Your Current Organism:
Caldicoprobacter faecalis
NCBI taxonomy Id: 937334
Other names: Acetomicrobium faecale, Acetomicrobium faecalis, C. faecalis, DSM 20678, JCM 30420
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.