STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_37080AP2/ERF domain-containing protein. (336 aa)    
Predicted Functional Partners:
COLO4_30611
Zinc finger, Dof-type.
  
    0.463
COLO4_15629
Pathogenic type III effector avirulence factor Avr cleavage site.
    
  0.449
COLO4_19867
NADH:ubiquinone/plastoquinone oxidoreductase.
   
   0.437
COLO4_21007
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
  0.427
COLO4_25931
Uncharacterized protein.
   
   0.423
COLO4_25033
Uncharacterized protein.
    
   0.422
COLO4_20400
Uncharacterized protein.
    
   0.422
COLO4_04416
NADH:ubiquinone oxidoreductase.
   
   0.420
COLO4_28716
Uncharacterized protein.
  
 
   0.414
COLO4_36134
Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24.
    
   0.412
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.