Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_05169 | COLO4_06390 | A0A1R3KRP8 | A0A1R3KN90 | WAT1-related protein. | Uncharacterized protein. | 0.466 |
COLO4_05169 | COLO4_08826 | A0A1R3KRP8 | A0A1R3KEM4 | WAT1-related protein. | DNA replication licensing factor mcm2. | 0.499 |
COLO4_05169 | COLO4_31802 | A0A1R3KRP8 | A0A1R3H3B6 | WAT1-related protein. | F-box protein. | 0.402 |
COLO4_05169 | COLO4_36706 | A0A1R3KRP8 | A0A1R3G640 | WAT1-related protein. | bHLH-MYC_N domain-containing protein. | 0.448 |
COLO4_06390 | COLO4_05169 | A0A1R3KN90 | A0A1R3KRP8 | Uncharacterized protein. | WAT1-related protein. | 0.466 |
COLO4_06390 | COLO4_08826 | A0A1R3KN90 | A0A1R3KEM4 | Uncharacterized protein. | DNA replication licensing factor mcm2. | 0.513 |
COLO4_06390 | COLO4_31802 | A0A1R3KN90 | A0A1R3H3B6 | Uncharacterized protein. | F-box protein. | 0.475 |
COLO4_06390 | COLO4_36706 | A0A1R3KN90 | A0A1R3G640 | Uncharacterized protein. | bHLH-MYC_N domain-containing protein. | 0.452 |
COLO4_06390 | COLO4_38247 | A0A1R3KN90 | A0A1R3FW91 | Uncharacterized protein. | Cyclic nucleotide-gated ion channel 1. | 0.519 |
COLO4_06475 | COLO4_36706 | A0A1R3KN61 | A0A1R3G640 | Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. | bHLH-MYC_N domain-containing protein. | 0.462 |
COLO4_08826 | COLO4_05169 | A0A1R3KEM4 | A0A1R3KRP8 | DNA replication licensing factor mcm2. | WAT1-related protein. | 0.499 |
COLO4_08826 | COLO4_06390 | A0A1R3KEM4 | A0A1R3KN90 | DNA replication licensing factor mcm2. | Uncharacterized protein. | 0.513 |
COLO4_08826 | COLO4_31802 | A0A1R3KEM4 | A0A1R3H3B6 | DNA replication licensing factor mcm2. | F-box protein. | 0.526 |
COLO4_08826 | COLO4_36706 | A0A1R3KEM4 | A0A1R3G640 | DNA replication licensing factor mcm2. | bHLH-MYC_N domain-containing protein. | 0.468 |
COLO4_08826 | COLO4_38247 | A0A1R3KEM4 | A0A1R3FW91 | DNA replication licensing factor mcm2. | Cyclic nucleotide-gated ion channel 1. | 0.474 |
COLO4_10770 | COLO4_36706 | A0A1R3K709 | A0A1R3G640 | BHLH domain-containing protein. | bHLH-MYC_N domain-containing protein. | 0.432 |
COLO4_13034 | COLO4_28857 | A0A1R3JYI3 | A0A1R3HHS1 | NPH3 domain-containing protein; Belongs to the NPH3 family. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.508 |
COLO4_13034 | COLO4_36706 | A0A1R3JYI3 | A0A1R3G640 | NPH3 domain-containing protein; Belongs to the NPH3 family. | bHLH-MYC_N domain-containing protein. | 0.484 |
COLO4_17941 | COLO4_36706 | A0A1R3JB55 | A0A1R3G640 | Flavin-containing monooxygenase. | bHLH-MYC_N domain-containing protein. | 0.448 |
COLO4_28857 | COLO4_13034 | A0A1R3HHS1 | A0A1R3JYI3 | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | NPH3 domain-containing protein; Belongs to the NPH3 family. | 0.508 |
page 1 of 2