STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_36706bHLH-MYC_N domain-containing protein. (400 aa)    
Predicted Functional Partners:
COLO4_13034
NPH3 domain-containing protein; Belongs to the NPH3 family.
  
     0.484
COLO4_08826
DNA replication licensing factor mcm2.
  
     0.468
COLO4_06475
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
  0.462
COLO4_06390
Uncharacterized protein.
  
     0.452
COLO4_17941
Flavin-containing monooxygenase.
  
     0.448
COLO4_05169
WAT1-related protein.
  
     0.448
COLO4_38247
Cyclic nucleotide-gated ion channel 1.
  
    0.447
COLO4_31802
F-box protein.
  
 
   0.445
COLO4_28857
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.442
COLO4_10770
BHLH domain-containing protein.
  
     0.432
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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