STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_33200CaATP_NAI domain-containing protein. (139 aa)    
Predicted Functional Partners:
COLO4_34797
Uncharacterized protein.
   
 0.698
COLO4_16518
EF-hand domain-containing protein.
  
 
 0.609
COLO4_27384
PAK-box/P21-Rho-binding protein.
  
 
 
 0.600
COLO4_17038
Bax inhibitor 1-like protein; Belongs to the BI1 family.
  
 
 
 0.578
COLO4_02816
Uncharacterized protein.
  
 
   0.564
COLO4_00312
Uncharacterized protein.
  
 
   0.564
COLO4_35263
Plant lipid transfer protein/Par allergen; Belongs to the plant LTP family.
  
   0.557
COLO4_37816
Uncharacterized protein.
  
 
   0.556
COLO4_20188
Uncharacterized protein.
  
 
   0.554
COLO4_31708
DUF3403 domain-containing protein.
  
 
   0.551
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.