STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_32972DCD domain-containing protein. (437 aa)    
Predicted Functional Partners:
COLO4_24195
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.511
COLO4_38547
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.447
COLO4_04205
Uncharacterized protein.
   
 
 0.447
COLO4_04206
Uncharacterized protein.
   
 
 0.447
COLO4_05242
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
     
 0.441
COLO4_34171
Myotubularin phosphatase domain-containing protein.
     
 0.422
COLO4_21198
ARID domain-containing protein.
     
 0.422
COLO4_35711
PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.
     
 0.414
COLO4_35712
PIK helical domain-containing protein.
     
 0.414
COLO4_22544
SAC domain-containing protein.
     
 0.413
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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