STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_32860Transcription factor GAMYB. (480 aa)    
Predicted Functional Partners:
COLO4_13902
SANT domain-containing protein.
    
 0.647
COLO4_31036
Transcription factor, TCP.
  
   
 0.542
COLO4_35922
Uncharacterized protein.
  
 
   0.535
COLO4_13096
GTD-binding domain-containing protein.
  
 
   0.532
COLO4_34842
Uncharacterized protein.
  
     0.524
COLO4_15893
Uncharacterized protein.
  
     0.515
COLO4_18299
POX family protein.
  
 
   0.514
COLO4_07020
Uncharacterized protein.
  
     0.512
COLO4_33589
Uncharacterized protein.
  
     0.507
COLO4_11613
Growth-regulating factor 5.
  
     0.503
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.