STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_32242Oxoglutarate/iron-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (279 aa)    
Predicted Functional Partners:
COLO4_22433
Autophagy-related protein 13.
   
 0.440
COLO4_14403
Peptidase C78, ubiquitin modifier-specific peptidase 1/ 2.
   
 0.440
COLO4_24037
Oxoglutarate/iron-dependent dioxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.437
COLO4_17419
Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.400
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.