Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_08496 | COLO4_21228 | A0A1R3KFP1 | A0A1R3IUW2 | Uncharacterized protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.491 |
COLO4_08496 | COLO4_31007 | A0A1R3KFP1 | A0A1R3H638 | Uncharacterized protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.509 |
COLO4_08496 | COLO4_32266 | A0A1R3KFP1 | A0A1R3H016 | Uncharacterized protein. | No apical meristem (NAM) protein. | 0.507 |
COLO4_08496 | COLO4_33665 | A0A1R3KFP1 | A0A1R3GS38 | Uncharacterized protein. | PC-Esterase. | 0.487 |
COLO4_08817 | COLO4_09124 | A0A1R3KEN4 | A0A1R3KD52 | Transcription factor GRAS; Belongs to the GRAS family. | HMA domain-containing protein. | 0.532 |
COLO4_08817 | COLO4_12947 | A0A1R3KEN4 | A0A1R3JYX3 | Transcription factor GRAS; Belongs to the GRAS family. | AP2/ERF domain-containing protein. | 0.483 |
COLO4_08817 | COLO4_21228 | A0A1R3KEN4 | A0A1R3IUW2 | Transcription factor GRAS; Belongs to the GRAS family. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.448 |
COLO4_08817 | COLO4_22143 | A0A1R3KEN4 | A0A1R3INT7 | Transcription factor GRAS; Belongs to the GRAS family. | Uncharacterized protein. | 0.498 |
COLO4_08817 | COLO4_30638 | A0A1R3KEN4 | A0A1R3H7I0 | Transcription factor GRAS; Belongs to the GRAS family. | Polyketide cyclase/dehydrase. | 0.525 |
COLO4_08817 | COLO4_31007 | A0A1R3KEN4 | A0A1R3H638 | Transcription factor GRAS; Belongs to the GRAS family. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.502 |
COLO4_08817 | COLO4_31173 | A0A1R3KEN4 | A0A1R3H593 | Transcription factor GRAS; Belongs to the GRAS family. | Uncharacterized protein. | 0.522 |
COLO4_08817 | COLO4_32266 | A0A1R3KEN4 | A0A1R3H016 | Transcription factor GRAS; Belongs to the GRAS family. | No apical meristem (NAM) protein. | 0.509 |
COLO4_09124 | COLO4_08817 | A0A1R3KD52 | A0A1R3KEN4 | HMA domain-containing protein. | Transcription factor GRAS; Belongs to the GRAS family. | 0.532 |
COLO4_09124 | COLO4_12947 | A0A1R3KD52 | A0A1R3JYX3 | HMA domain-containing protein. | AP2/ERF domain-containing protein. | 0.519 |
COLO4_09124 | COLO4_21228 | A0A1R3KD52 | A0A1R3IUW2 | HMA domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.456 |
COLO4_09124 | COLO4_22143 | A0A1R3KD52 | A0A1R3INT7 | HMA domain-containing protein. | Uncharacterized protein. | 0.521 |
COLO4_09124 | COLO4_30638 | A0A1R3KD52 | A0A1R3H7I0 | HMA domain-containing protein. | Polyketide cyclase/dehydrase. | 0.538 |
COLO4_09124 | COLO4_31007 | A0A1R3KD52 | A0A1R3H638 | HMA domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.502 |
COLO4_09124 | COLO4_31173 | A0A1R3KD52 | A0A1R3H593 | HMA domain-containing protein. | Uncharacterized protein. | 0.523 |
COLO4_09124 | COLO4_32266 | A0A1R3KD52 | A0A1R3H016 | HMA domain-containing protein. | No apical meristem (NAM) protein. | 0.504 |
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