COLO4_31891 protein (Corchorus olitorius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

COLO4_31891

Uncharacterized protein. (86 aa)

Predicted Functional Partners:

COLO4_15298

0.964

COLO4_34571

0.956

COLO4_18674

0.952

COLO4_26972

0.951

COLO4_07727

0.935

COLO4_29362

0.658

COLO4_25632

0.593

COLO4_31803

0.517

COLO4_15640

0.517

COLO4_11254

0.517

Your Current Organism:

Corchorus olitorius

NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COLO4_07727	COLO4_15298	A0A1R3KIT0	A0A1R3JND8	MPN domain-containing protein.	Tetratricopeptide-like helical.	0.974
COLO4_07727	COLO4_18674	A0A1R3KIT0	A0A1R3J8B7	MPN domain-containing protein.	Quinonprotein alcohol dehydrogenase-like-superfamily.	0.972
COLO4_07727	COLO4_26972	A0A1R3KIT0	A0A1R3HTW9	MPN domain-containing protein.	Magnesium transporter.	0.936
COLO4_07727	COLO4_31891	A0A1R3KIT0	A0A1R3H386	MPN domain-containing protein.	Uncharacterized protein.	0.935
COLO4_07727	COLO4_34571	A0A1R3KIT0	A0A1R3GK80	MPN domain-containing protein.	Transmembrane protein 93.	0.960
COLO4_11254	COLO4_15640	A0A1R3K5A7	A0A1R3JLV3	B-cell receptor-associated 31-like protein.	Uncharacterized protein.	0.881
COLO4_11254	COLO4_25632	A0A1R3K5A7	A0A1R3I0Y1	B-cell receptor-associated 31-like protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.545
COLO4_11254	COLO4_31891	A0A1R3K5A7	A0A1R3H386	B-cell receptor-associated 31-like protein.	Uncharacterized protein.	0.517
COLO4_15298	COLO4_07727	A0A1R3JND8	A0A1R3KIT0	Tetratricopeptide-like helical.	MPN domain-containing protein.	0.974
COLO4_15298	COLO4_18674	A0A1R3JND8	A0A1R3J8B7	Tetratricopeptide-like helical.	Quinonprotein alcohol dehydrogenase-like-superfamily.	0.976
COLO4_15298	COLO4_26972	A0A1R3JND8	A0A1R3HTW9	Tetratricopeptide-like helical.	Magnesium transporter.	0.961
COLO4_15298	COLO4_31891	A0A1R3JND8	A0A1R3H386	Tetratricopeptide-like helical.	Uncharacterized protein.	0.964
COLO4_15298	COLO4_34571	A0A1R3JND8	A0A1R3GK80	Tetratricopeptide-like helical.	Transmembrane protein 93.	0.976
COLO4_15640	COLO4_11254	A0A1R3JLV3	A0A1R3K5A7	Uncharacterized protein.	B-cell receptor-associated 31-like protein.	0.881
COLO4_15640	COLO4_25632	A0A1R3JLV3	A0A1R3I0Y1	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.545
COLO4_15640	COLO4_31891	A0A1R3JLV3	A0A1R3H386	Uncharacterized protein.	Uncharacterized protein.	0.517
COLO4_18674	COLO4_07727	A0A1R3J8B7	A0A1R3KIT0	Quinonprotein alcohol dehydrogenase-like-superfamily.	MPN domain-containing protein.	0.972
COLO4_18674	COLO4_15298	A0A1R3J8B7	A0A1R3JND8	Quinonprotein alcohol dehydrogenase-like-superfamily.	Tetratricopeptide-like helical.	0.976
COLO4_18674	COLO4_26972	A0A1R3J8B7	A0A1R3HTW9	Quinonprotein alcohol dehydrogenase-like-superfamily.	Magnesium transporter.	0.960
COLO4_18674	COLO4_31891	A0A1R3J8B7	A0A1R3H386	Quinonprotein alcohol dehydrogenase-like-superfamily.	Uncharacterized protein.	0.952