Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_01468 | COLO4_09339 | A0A1R3L2H2 | A0A1R3KCJ0 | Transcription regulator HTH, LacI. | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | 0.504 |
COLO4_01468 | COLO4_13602 | A0A1R3L2H2 | A0A1R3JVQ6 | Transcription regulator HTH, LacI. | Galactose-1-phosphate uridyl transferase, class I. | 0.588 |
COLO4_01468 | COLO4_20752 | A0A1R3L2H2 | A0A1R3IXD5 | Transcription regulator HTH, LacI. | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | 0.555 |
COLO4_01468 | COLO4_31662 | A0A1R3L2H2 | A0A1R3H3P2 | Transcription regulator HTH, LacI. | DUF3403 domain-containing protein. | 0.504 |
COLO4_09339 | COLO4_01468 | A0A1R3KCJ0 | A0A1R3L2H2 | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | Transcription regulator HTH, LacI. | 0.504 |
COLO4_09339 | COLO4_13602 | A0A1R3KCJ0 | A0A1R3JVQ6 | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | Galactose-1-phosphate uridyl transferase, class I. | 0.540 |
COLO4_09339 | COLO4_20752 | A0A1R3KCJ0 | A0A1R3IXD5 | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | 0.897 |
COLO4_09339 | COLO4_31662 | A0A1R3KCJ0 | A0A1R3H3P2 | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | DUF3403 domain-containing protein. | 0.449 |
COLO4_13602 | COLO4_01468 | A0A1R3JVQ6 | A0A1R3L2H2 | Galactose-1-phosphate uridyl transferase, class I. | Transcription regulator HTH, LacI. | 0.588 |
COLO4_13602 | COLO4_09339 | A0A1R3JVQ6 | A0A1R3KCJ0 | Galactose-1-phosphate uridyl transferase, class I. | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | 0.540 |
COLO4_13602 | COLO4_31662 | A0A1R3JVQ6 | A0A1R3H3P2 | Galactose-1-phosphate uridyl transferase, class I. | DUF3403 domain-containing protein. | 0.455 |
COLO4_20752 | COLO4_01468 | A0A1R3IXD5 | A0A1R3L2H2 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | Transcription regulator HTH, LacI. | 0.555 |
COLO4_20752 | COLO4_09339 | A0A1R3IXD5 | A0A1R3KCJ0 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family. | 0.897 |
COLO4_20752 | COLO4_25231 | A0A1R3IXD5 | A0A1R3I3Z8 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | GMC_OxRdtase_N domain-containing protein. | 0.637 |
COLO4_20752 | COLO4_30680 | A0A1R3IXD5 | A0A1R3H7J1 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | GMC_OxRdtase_N domain-containing protein. | 0.637 |
COLO4_20752 | COLO4_31662 | A0A1R3IXD5 | A0A1R3H3P2 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | DUF3403 domain-containing protein. | 0.477 |
COLO4_20752 | COLO4_32224 | A0A1R3IXD5 | A0A1R3H094 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | GMC_oxred_C domain-containing protein. | 0.637 |
COLO4_20752 | COLO4_38017 | A0A1R3IXD5 | A0A1R3FXR7 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | GMC_OxRdtase_N domain-containing protein. | 0.637 |
COLO4_20752 | COLO4_38020 | A0A1R3IXD5 | A0A1R3FXG8 | Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. | Uncharacterized protein. | 0.637 |
COLO4_23165 | COLO4_31662 | A0A1R3IC31 | A0A1R3H3P2 | Ubiquitin. | DUF3403 domain-containing protein. | 0.468 |
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