STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_31634Uncharacterized protein; Belongs to the cyclin family. (325 aa)    
Predicted Functional Partners:
COLO4_20737
Retinoblastoma-associated protein, B-box.
    
 0.930
COLO4_19215
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
   
 0.787
COLO4_19083
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.777
COLO4_10481
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.734
COLO4_18633
Protein kinase domain-containing protein.
   
 0.719
COLO4_15011
Protein kinase domain-containing protein.
   
 0.719
COLO4_03303
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.702
COLO4_29612
E2F_TDP domain-containing protein.
    
 0.664
COLO4_34820
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.657
COLO4_18632
Uncharacterized protein.
   
 0.657
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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