STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_30918Aminoacyl-tRNA synthetase, class II (D/K/N). (472 aa)    
Predicted Functional Partners:
COLO4_15980
Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic.
  
 0.968
COLO4_04505
Aminoacyl-tRNA synthetase, class II (D/K/N).
  
  
 
0.813
COLO4_37172
Aspartyl/Asparaginyl-tRNA synthetase, class IIb.
  
  
 
0.810
COLO4_11187
LOB domain-containing protein.
   
 0.789
COLO4_11190
Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.
   
 0.789
COLO4_03889
LOB domain-containing protein.
   
 0.789
COLO4_20192
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.784
COLO4_36928
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.778
COLO4_23130
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.778
COLO4_19840
DNA repair protein rad10.
   
 0.775
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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