STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_30523Uncharacterized protein. (655 aa)    
Predicted Functional Partners:
COLO4_17684
Zinc finger, CCCH-type.
   
 0.990
COLO4_04946
Uncharacterized protein.
  
 
 
0.984
COLO4_02805
Uncharacterized protein.
    
 0.972
COLO4_04346
RNA-processing protein, HAT helix.
    
 0.971
COLO4_34619
Pre-mRNA polyadenylation factor Fip1.
   
 0.968
COLO4_18776
Pre-mRNA polyadenylation factor Fip1.
   
 0.968
COLO4_37303
RRM domain-containing protein.
   
 0.965
COLO4_28056
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.962
COLO4_28055
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.962
COLO4_14531
Uncharacterized protein.
   
 0.962
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.