STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_30505AAA domain-containing protein. (780 aa)    
Predicted Functional Partners:
COLO4_27086
E3 ubiquitin-protein ligase.
     
 0.849
COLO4_07768
Heme A synthase.
    
 0.614
COLO4_00574
Binding-protein-dependent transport systems inner membrane component.
    
  0.588
COLO4_16771
TAP42-like protein.
    
 0.552
COLO4_23553
CAAX amino terminal protease.
  
 
 0.521
COLO4_07390
CAAX amino terminal protease.
  
 
 0.521
COLO4_17989
Amino acid transporter, transmembrane.
  
   0.488
COLO4_14117
General substrate transporter.
  
 
   0.457
COLO4_17302
Auxin influx carrier component.
  
   0.444
COLO4_36862
Pleiotropic drug resistance protein 1-like protein.
  
     0.432
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.