Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_09556 | COLO4_11054 | A0A1R3KBV1 | A0A1R3K678 | Photosystem II PsbQ, oxygen evolving complex. | Peptidylprolyl isomerase. | 0.927 |
COLO4_09556 | COLO4_11231 | A0A1R3KBV1 | A0A1R3K5D7 | Photosystem II PsbQ, oxygen evolving complex. | NAD(P)H-quinone oxidoreductase, subunit N. | 0.953 |
COLO4_09556 | COLO4_13101 | A0A1R3KBV1 | A0A1R3JY07 | Photosystem II PsbQ, oxygen evolving complex. | Uncharacterized protein. | 0.947 |
COLO4_09556 | COLO4_13607 | A0A1R3KBV1 | A0A1R3JVY5 | Photosystem II PsbQ, oxygen evolving complex. | Uncharacterized protein. | 0.968 |
COLO4_09556 | COLO4_15765 | A0A1R3KBV1 | A0A1R3JL29 | Photosystem II PsbQ, oxygen evolving complex. | Uncharacterized protein. | 0.959 |
COLO4_09556 | COLO4_18067 | A0A1R3KBV1 | A0A1R3JAH6 | Photosystem II PsbQ, oxygen evolving complex. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.970 |
COLO4_09556 | COLO4_26702 | A0A1R3KBV1 | A0A1R3HUR9 | Photosystem II PsbQ, oxygen evolving complex. | Glycosyl transferase, family 9. | 0.959 |
COLO4_09556 | COLO4_28333 | A0A1R3KBV1 | A0A1R3HLV0 | Photosystem II PsbQ, oxygen evolving complex. | Uncharacterized protein. | 0.957 |
COLO4_09556 | COLO4_30469 | A0A1R3KBV1 | A0A1R3H8K8 | Photosystem II PsbQ, oxygen evolving complex. | 2Fe-2S ferredoxin-type domain-containing protein. | 0.956 |
COLO4_11054 | COLO4_09556 | A0A1R3K678 | A0A1R3KBV1 | Peptidylprolyl isomerase. | Photosystem II PsbQ, oxygen evolving complex. | 0.927 |
COLO4_11054 | COLO4_11231 | A0A1R3K678 | A0A1R3K5D7 | Peptidylprolyl isomerase. | NAD(P)H-quinone oxidoreductase, subunit N. | 0.944 |
COLO4_11054 | COLO4_13101 | A0A1R3K678 | A0A1R3JY07 | Peptidylprolyl isomerase. | Uncharacterized protein. | 0.940 |
COLO4_11054 | COLO4_13607 | A0A1R3K678 | A0A1R3JVY5 | Peptidylprolyl isomerase. | Uncharacterized protein. | 0.954 |
COLO4_11054 | COLO4_15765 | A0A1R3K678 | A0A1R3JL29 | Peptidylprolyl isomerase. | Uncharacterized protein. | 0.962 |
COLO4_11054 | COLO4_18067 | A0A1R3K678 | A0A1R3JAH6 | Peptidylprolyl isomerase. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.951 |
COLO4_11054 | COLO4_26702 | A0A1R3K678 | A0A1R3HUR9 | Peptidylprolyl isomerase. | Glycosyl transferase, family 9. | 0.961 |
COLO4_11054 | COLO4_28333 | A0A1R3K678 | A0A1R3HLV0 | Peptidylprolyl isomerase. | Uncharacterized protein. | 0.948 |
COLO4_11054 | COLO4_30469 | A0A1R3K678 | A0A1R3H8K8 | Peptidylprolyl isomerase. | 2Fe-2S ferredoxin-type domain-containing protein. | 0.947 |
COLO4_11231 | COLO4_09556 | A0A1R3K5D7 | A0A1R3KBV1 | NAD(P)H-quinone oxidoreductase, subunit N. | Photosystem II PsbQ, oxygen evolving complex. | 0.953 |
COLO4_11231 | COLO4_11054 | A0A1R3K5D7 | A0A1R3K678 | NAD(P)H-quinone oxidoreductase, subunit N. | Peptidylprolyl isomerase. | 0.944 |
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