STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_29909N-acetyltransferase domain-containing protein. (152 aa)    
Predicted Functional Partners:
COLO4_28283
Uncharacterized protein.
    
  0.793
COLO4_12469
Uncharacterized protein.
    
 
 0.650
COLO4_13501
SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.648
COLO4_23659
Nudix hydrolase domain-containing protein.
   
 0.641
COLO4_27802
D-aminoacyl-tRNA deacylase.
    
 0.625
COLO4_27493
D-aminoacyl-tRNA deacylase.
    
 0.625
COLO4_27851
Reversibly glycosylated polypeptide family.
  
 
   0.555
COLO4_22372
S1 domain-containing protein.
    
 0.553
COLO4_23154
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
 
   0.530
COLO4_07501
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
 
   0.526
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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