STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_29809Trihelix transcription factor GT-2-like protein. (565 aa)    
Predicted Functional Partners:
COLO4_31097
No apical meristem (NAM) protein.
  
     0.482
COLO4_14233
Transcription factor, TCP.
  
     0.457
COLO4_31008
Remorin_C domain-containing protein.
  
     0.444
COLO4_11105
Uncharacterized protein.
  
     0.430
COLO4_30100
BAT2_N domain-containing protein.
  
 
   0.428
COLO4_12641
Transcription factor, TCP.
  
     0.427
COLO4_09448
No apical meristem (NAM) protein.
  
     0.425
COLO4_12325
GIY-YIG nuclease superfamily.
      
 0.416
COLO4_23347
Pectinesterase inhibitor.
  
     0.412
COLO4_00022
Histidine phosphatase superfamily, clade-1.
      
 0.412
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.