STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_29504X8 domain-containing protein. (109 aa)    
Predicted Functional Partners:
COLO4_28032
Uncharacterized protein.
  
     0.514
COLO4_31465
Uncharacterized protein.
  
     0.513
COLO4_30675
LOB domain-containing protein.
  
     0.513
COLO4_19820
Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family.
  
     0.512
COLO4_10101
Cellulose synthase.
  
     0.512
COLO4_02776
F-box domain-containing protein.
  
     0.512
COLO4_20699
DOG1 domain-containing protein.
  
     0.511
COLO4_27797
GDP-fucose protein O-fucosyltransferase.
  
     0.508
COLO4_29450
Transcription factor TGA1.
  
     0.507
COLO4_08643
Peptidase A1 domain-containing protein.
  
     0.507
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.