STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_28515Uncharacterized protein. (444 aa)    
Predicted Functional Partners:
COLO4_23165
Ubiquitin.
    
 0.972
COLO4_14341
Ubiquitin.
    
  0.956
COLO4_07087
Ubiquitin.
    
  0.956
COLO4_07734
Uncharacterized protein.
    
 0.954
COLO4_21927
Ribosomal protein L2.
    
 
 0.932
COLO4_30834
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
   0.914
COLO4_10513
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
    
 
 0.909
COLO4_32536
Ribosomal protein S14.
    
   0.908
COLO4_25962
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
   0.908
COLO4_22799
Ribosomal protein L32e.
    
   0.908
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.