STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_27263Tetratricopeptide-like helical. (321 aa)    
Predicted Functional Partners:
COLO4_17530
Tetratricopeptide-like helical.
    
 0.864
COLO4_21511
RNA polymerase II accessory factor, Cdc73.
    
 0.838
COLO4_22055
DOC domain-containing protein.
    
 0.834
COLO4_30512
RNA polymerase II-associated, Paf1.
   
 0.833
COLO4_31575
WD_REPEATS_REGION domain-containing protein.
    
 0.832
COLO4_37593
Leo1-like protein.
    
 0.831
COLO4_25753
Anaphase-promoting complex subunit 1.
    
 0.831
COLO4_38399
Uncharacterized protein.
   
 0.829
COLO4_25220
SnAC domain-containing protein.
   
 0.817
COLO4_25219
Glutamine-Leucine-Glutamine, QLQ.
   
 0.817
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.