STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_25840Purple acid phosphatase. (374 aa)    
Predicted Functional Partners:
COLO4_33573
Haloacid dehalogenase/epoxide hydrolase.
  
 
 0.942
COLO4_31583
Haloacid dehalogenase/epoxide hydrolase.
  
 
 0.873
COLO4_05541
Thioredoxin domain-containing protein.
   
 
 0.742
COLO4_33978
Nudix hydrolase domain-containing protein.
    
  0.598
COLO4_17917
Nudix hydrolase domain-containing protein.
    
  0.598
COLO4_05761
Nudix hydrolase domain-containing protein.
    
  0.598
COLO4_00685
Tetrapyrrole methylase.
    
 0.521
COLO4_15370
Tetratricopeptide TPR-1.
    
 0.508
COLO4_08283
Uncharacterized protein.
    
 0.508
COLO4_08284
ANK_REP_REGION domain-containing protein.
    
 0.508
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.