STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_24610Ureohydrolase; Belongs to the arginase family. (341 aa)    
Predicted Functional Partners:
COLO4_31038
Ornithine aminotransferase.
  
 0.956
COLO4_22349
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
  
 
 0.948
COLO4_26277
Ornithine/putrescine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
   
 0.947
COLO4_36105
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.946
COLO4_30296
Ornithine cyclodeaminase/mu-crystallin.
  
 
 0.945
COLO4_28080
Argininosuccinate synthase.
   
 
 0.939
COLO4_09055
Biotin/lipoyl attachment.
  
 
 0.938
COLO4_35249
Fumarate lyase.
     
 0.936
COLO4_26076
Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.932
COLO4_35077
Uncharacterized protein.
    
 0.931
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.