STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_23775HAD-superfamily hydrolase, subfamily IIA, CECR5. (353 aa)    
Predicted Functional Partners:
COLO4_11961
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 
 0.938
COLO4_33742
HAD-superfamily hydrolase, subfamily IIIA.
   
 
 0.887
COLO4_31135
Ubiquitin; Belongs to the membrane-bound acyltransferase family.
   
 
  0.879
COLO4_19762
Uncharacterized protein.
  
 
 0.827
COLO4_17341
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
 
 0.827
COLO4_15705
Pyridoxal phosphate (Active vitamin B6) biosynthesis, pyridoxal kinase.
    
 0.718
COLO4_25163
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
   
 
 0.676
COLO4_22538
Aminotransferase, class V/Cysteine desulfurase.
  
 
 0.676
COLO4_09336
Uncharacterized protein.
  
 
 0.676
COLO4_15183
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
   
 
  0.660
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.