STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_23596Transferase. (439 aa)    
Predicted Functional Partners:
COLO4_32799
Uncharacterized protein.
    
 0.865
COLO4_04289
Phosphoadenosine phosphosulfate reductase.
    
  0.567
COLO4_03544
Phosphoadenosine phosphosulfate reductase.
    
  0.567
COLO4_28065
AMP-dependent synthetase/ligase.
    
 0.494
COLO4_20414
AMP-dependent synthetase/ligase.
    
 0.493
COLO4_16895
AMP-dependent synthetase/ligase.
    
 0.493
COLO4_26682
NAD-dependent epimerase/dehydratase.
   
 0.486
COLO4_28064
AMP-dependent synthetase/ligase.
    
  0.476
COLO4_32650
Uncharacterized protein.
   
 
  0.475
COLO4_38150
Chal_sti_synt_C domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
   
  0.459
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.