Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_06303 | COLO4_23464 | A0A1R3KNC5 | A0A1R3IGE4 | Polyketide cyclase/dehydrase. | Phosphatase 2C (PP2C)-like protein. | 0.518 |
COLO4_10685 | COLO4_23464 | A0A1R3K7F4 | A0A1R3IGE4 | Polyketide cyclase/dehydrase. | Phosphatase 2C (PP2C)-like protein. | 0.518 |
COLO4_17039 | COLO4_23464 | A0A1R3JEI2 | A0A1R3IGE4 | Uncharacterized protein. | Phosphatase 2C (PP2C)-like protein. | 0.500 |
COLO4_18381 | COLO4_23464 | A0A1R3J9C8 | A0A1R3IGE4 | Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. | Phosphatase 2C (PP2C)-like protein. | 0.476 |
COLO4_21046 | COLO4_23464 | A0A1R3IVI0 | A0A1R3IGE4 | Polyketide cyclase/dehydrase. | Phosphatase 2C (PP2C)-like protein. | 0.598 |
COLO4_23464 | COLO4_06303 | A0A1R3IGE4 | A0A1R3KNC5 | Phosphatase 2C (PP2C)-like protein. | Polyketide cyclase/dehydrase. | 0.518 |
COLO4_23464 | COLO4_10685 | A0A1R3IGE4 | A0A1R3K7F4 | Phosphatase 2C (PP2C)-like protein. | Polyketide cyclase/dehydrase. | 0.518 |
COLO4_23464 | COLO4_17039 | A0A1R3IGE4 | A0A1R3JEI2 | Phosphatase 2C (PP2C)-like protein. | Uncharacterized protein. | 0.500 |
COLO4_23464 | COLO4_18381 | A0A1R3IGE4 | A0A1R3J9C8 | Phosphatase 2C (PP2C)-like protein. | Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. | 0.476 |
COLO4_23464 | COLO4_21046 | A0A1R3IGE4 | A0A1R3IVI0 | Phosphatase 2C (PP2C)-like protein. | Polyketide cyclase/dehydrase. | 0.598 |
COLO4_23464 | COLO4_27119 | A0A1R3IGE4 | A0A1R3HSL4 | Phosphatase 2C (PP2C)-like protein. | Uncharacterized protein. | 0.576 |
COLO4_23464 | COLO4_29437 | A0A1R3IGE4 | A0A1R3HEG4 | Phosphatase 2C (PP2C)-like protein. | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | 0.463 |
COLO4_23464 | COLO4_30638 | A0A1R3IGE4 | A0A1R3H7I0 | Phosphatase 2C (PP2C)-like protein. | Polyketide cyclase/dehydrase. | 0.598 |
COLO4_23464 | COLO4_37304 | A0A1R3IGE4 | A0A1R3G2E0 | Phosphatase 2C (PP2C)-like protein. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.505 |
COLO4_23464 | COLO4_38258 | A0A1R3IGE4 | A0A1R3FVY6 | Phosphatase 2C (PP2C)-like protein. | Polyketide cyclase/dehydrase. | 0.518 |
COLO4_27119 | COLO4_23464 | A0A1R3HSL4 | A0A1R3IGE4 | Uncharacterized protein. | Phosphatase 2C (PP2C)-like protein. | 0.576 |
COLO4_29437 | COLO4_23464 | A0A1R3HEG4 | A0A1R3IGE4 | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | Phosphatase 2C (PP2C)-like protein. | 0.463 |
COLO4_29437 | COLO4_37304 | A0A1R3HEG4 | A0A1R3G2E0 | Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.994 |
COLO4_30638 | COLO4_23464 | A0A1R3H7I0 | A0A1R3IGE4 | Polyketide cyclase/dehydrase. | Phosphatase 2C (PP2C)-like protein. | 0.598 |
COLO4_37304 | COLO4_23464 | A0A1R3G2E0 | A0A1R3IGE4 | Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Phosphatase 2C (PP2C)-like protein. | 0.505 |
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