STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_232003'-5' exonuclease domain-containing protein. (223 aa)    
Predicted Functional Partners:
COLO4_19317
Uncharacterized protein.
   
 
 0.744
COLO4_17513
SAP domain-containing protein.
    
 
 0.743
COLO4_30985
RECA_2 domain-containing protein.
    
 0.674
COLO4_37720
Nucleic acid binding, tRNA/helicase-type.
   
  0.659
COLO4_19047
Nucleic acid binding, tRNA/helicase-type.
   
  0.659
COLO4_19083
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.653
COLO4_13435
FHA domain-containing protein.
    
 0.637
COLO4_30500
XPG/Rad2 endonuclease.
   
 0.615
COLO4_26804
Exonuclease 1-like protein.
   
 0.615
COLO4_22817
XPG/Rad2 endonuclease.
   
 0.615
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.