STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_22820PMD domain-containing protein. (407 aa)    
Predicted Functional Partners:
COLO4_27771
Uncharacterized protein.
   
 0.806
COLO4_25875
Uncharacterized protein.
   
 0.806
COLO4_18617
Uncharacterized protein.
   
 0.806
COLO4_11061
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
    
 0.520
COLO4_21995
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
   
 
  0.469
COLO4_34441
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily.
   
 
  0.457
COLO4_22266
Threonine dehydratase.
   
 
  0.411
COLO4_00941
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily.
   
 
  0.411
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.