STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_21737ABC transporter-like protein. (237 aa)    
Predicted Functional Partners:
COLO4_23361
Uncharacterized protein.
  
  
 
0.561
COLO4_11824
ABC transporter-like protein.
  
 0.533
COLO4_25844
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.530
COLO4_21740
ABC transporter-like protein.
  
  
 
0.526
COLO4_07417
Uncharacterized protein.
  
  
 
0.520
COLO4_21742
ABC transporter-like protein.
 
     0.508
COLO4_34797
Uncharacterized protein.
   
 0.496
COLO4_16461
Carboxyl transferase.
   
 0.487
COLO4_21735
ABC transporter-like protein.
 
     0.482
COLO4_38111
ABC transmembrane type-1 domain-containing protein.
  
 0.480
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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