Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_17668 | COLO4_18127 | A0A1R3JBZ6 | A0A1R3JA82 | Photosystem I PsaG/PsaK protein. | Photosystem II PsbX. | 0.890 |
COLO4_17668 | COLO4_21123 | A0A1R3JBZ6 | A0A1R3IV50 | Photosystem I PsaG/PsaK protein. | Photosystem II PsbX. | 0.831 |
COLO4_17668 | COLO4_21547 | A0A1R3JBZ6 | A0A1R3ISX3 | Photosystem I PsaG/PsaK protein. | STAS domain-containing protein. | 0.699 |
COLO4_17668 | COLO4_21548 | A0A1R3JBZ6 | A0A1R3ISR4 | Photosystem I PsaG/PsaK protein. | Sulfate transporter 3.1-like protein. | 0.699 |
COLO4_17668 | COLO4_22173 | A0A1R3JBZ6 | A0A1R3INM0 | Photosystem I PsaG/PsaK protein. | Photosystem II PsbO, manganese-stabilising. | 0.753 |
COLO4_17668 | COLO4_25107 | A0A1R3JBZ6 | A0A1R3I4S7 | Photosystem I PsaG/PsaK protein. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.870 |
COLO4_17668 | COLO4_25108 | A0A1R3JBZ6 | A0A1R3I4N9 | Photosystem I PsaG/PsaK protein. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.870 |
COLO4_17668 | COLO4_29888 | A0A1R3JBZ6 | A0A1R3HCQ1 | Photosystem I PsaG/PsaK protein. | Photosystem II PsbP, oxygen evolving complex. | 0.862 |
COLO4_17668 | COLO4_30434 | A0A1R3JBZ6 | A0A1R3H8L2 | Photosystem I PsaG/PsaK protein. | Photosystem I PsaH, reaction centre subunit VI. | 0.982 |
COLO4_17668 | COLO4_30928 | A0A1R3JBZ6 | A0A1R3H6C5 | Photosystem I PsaG/PsaK protein. | Photosystem I PsaF, reaction centre subunit III. | 0.990 |
COLO4_18127 | COLO4_17668 | A0A1R3JA82 | A0A1R3JBZ6 | Photosystem II PsbX. | Photosystem I PsaG/PsaK protein. | 0.890 |
COLO4_18127 | COLO4_21123 | A0A1R3JA82 | A0A1R3IV50 | Photosystem II PsbX. | Photosystem II PsbX. | 0.549 |
COLO4_18127 | COLO4_21547 | A0A1R3JA82 | A0A1R3ISX3 | Photosystem II PsbX. | STAS domain-containing protein. | 0.660 |
COLO4_18127 | COLO4_21548 | A0A1R3JA82 | A0A1R3ISR4 | Photosystem II PsbX. | Sulfate transporter 3.1-like protein. | 0.660 |
COLO4_18127 | COLO4_22173 | A0A1R3JA82 | A0A1R3INM0 | Photosystem II PsbX. | Photosystem II PsbO, manganese-stabilising. | 0.974 |
COLO4_18127 | COLO4_25107 | A0A1R3JA82 | A0A1R3I4S7 | Photosystem II PsbX. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.977 |
COLO4_18127 | COLO4_25108 | A0A1R3JA82 | A0A1R3I4N9 | Photosystem II PsbX. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.977 |
COLO4_18127 | COLO4_29888 | A0A1R3JA82 | A0A1R3HCQ1 | Photosystem II PsbX. | Photosystem II PsbP, oxygen evolving complex. | 0.973 |
COLO4_18127 | COLO4_30434 | A0A1R3JA82 | A0A1R3H8L2 | Photosystem II PsbX. | Photosystem I PsaH, reaction centre subunit VI. | 0.458 |
COLO4_18127 | COLO4_30928 | A0A1R3JA82 | A0A1R3H6C5 | Photosystem II PsbX. | Photosystem I PsaF, reaction centre subunit III. | 0.692 |
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