STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_21483Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
COLO4_17379
Protein translocase complex, SecE/Sec61-gamma subunit.
      
 0.505
COLO4_09103
SecY/SEC61-alpha family; Belongs to the SecY/SEC61-alpha family.
      
 0.505
COLO4_09042
Protein translocase subunit SecA.
      
 0.505
COLO4_23129
Protein translocase subunit SecA; Belongs to the SecA family.
      
 0.501
COLO4_16067
SecY/SEC61-alpha family.
    
 
 0.500
COLO4_00391
Ribosomal protein; Belongs to the SecY/SEC61-alpha family.
    
 
 0.500
COLO4_33977
Lumazine-binding protein.
      
 0.452
COLO4_13867
Translocon at the outer envelope membrane of chloroplast.
  
     0.436
COLO4_33450
Translocon at the outer envelope membrane of chloroplast.
  
     0.432
COLO4_17293
Avirulence induced family protein.
  
     0.402
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.