STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_21151Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
COLO4_28077
Nop domain-containing protein.
   
 
 0.881
COLO4_28022
Fibrillarin.
   
 
 0.748
COLO4_25342
Fibrillarin.
   
 
 0.748
COLO4_08362
G-patch domain-containing protein.
   
 
 0.743
COLO4_29189
Pre-rRNA-processing protein ESF2.
   
   0.721
COLO4_13628
Nop domain-containing protein.
   
 
 0.661
COLO4_29815
Brix domain-containing protein.
   
   0.628
COLO4_09092
Mitochondrial GTPase 1.
   
 
 0.606
COLO4_09004
CP-type G domain-containing protein.
   
 
 0.606
COLO4_07946
CCAAT-binding factor.
   
    0.598
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.