STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_20384Peptidase M28. (868 aa)    
Predicted Functional Partners:
COLO4_18809
CYTOSOL_AP domain-containing protein.
     
 0.825
COLO4_13602
Galactose-1-phosphate uridyl transferase, class I.
   
 
  0.753
COLO4_07659
Uncharacterized protein.
     
 0.686
COLO4_26153
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.650
COLO4_31893
E3 ubiquitin-protein ligase.
    
 0.605
COLO4_15183
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
   
 
 0.605
COLO4_19602
Uncharacterized protein.
     
 0.598
COLO4_35671
ERAP1_C domain-containing protein.
   
 0.590
COLO4_30720
Aminopeptidase.
   
 0.590
COLO4_21102
Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase.
   
 0.590
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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