STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_20073Zinc finger, RanBP2-type. (888 aa)    
Predicted Functional Partners:
COLO4_00312
Uncharacterized protein.
  
 
 0.611
COLO4_09539
RRM domain-containing protein.
   
 
 0.573
COLO4_06855
RRM domain-containing protein.
   
 
 0.570
COLO4_29256
WD_REPEATS_REGION domain-containing protein.
   
    0.548
COLO4_23120
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
  
 0.534
COLO4_00311
RRM domain-containing protein.
   
 
 0.532
COLO4_33258
HMA domain-containing protein.
  
 
 0.498
COLO4_34912
WD_REPEATS_REGION domain-containing protein.
   
    0.487
COLO4_34262
Condensin complex components subunit.
  
     0.487
COLO4_12887
WD_REPEATS_REGION domain-containing protein.
   
    0.477
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.