STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_19506Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
COLO4_35231
BHLH domain-containing protein.
  
 
 0.840
COLO4_27346
Transcription factor-like protein.
  
 
 0.835
COLO4_24742
BHLH domain-containing protein.
  
 
 0.834
COLO4_24029
Basic helix-loop-helix DNA-binding superfamily protein.
  
 
 0.830
COLO4_31311
BHLH domain-containing protein.
    
 0.792
COLO4_10857
Ribosomal protein L6.
    
 0.787
COLO4_32624
Uncharacterized protein.
   
 0.783
COLO4_19088
RRM domain-containing protein.
   
 0.783
COLO4_11589
Uncharacterized protein.
   
 0.783
COLO4_11913
PX domain-containing protein.
  
 
 0.765
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.