STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_19081Neutral ceramidase. (747 aa)    
Predicted Functional Partners:
COLO4_14061
DAGKc domain-containing protein.
    
 0.927
COLO4_31872
Ceramidase.
    
 0.921
COLO4_20272
Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.
     
 0.921
COLO4_20189
Ceramidase.
    
 0.921
COLO4_31573
DAGKc domain-containing protein.
    
 0.918
COLO4_31496
Zinc finger, RING-type.
     
 0.908
COLO4_24884
Glucosylceramidase.
     
 0.908
COLO4_17691
Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.
     
 0.908
COLO4_20849
Short-chain dehydrogenase/reductase SDR.
     
 0.894
COLO4_23001
Fatty acid hydroxylase; Belongs to the sterol desaturase family.
     
 0.888
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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