STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_18688Aspartate aminotransferase. (420 aa)    
Predicted Functional Partners:
COLO4_17836
Malate dehydrogenase.
   
 0.948
COLO4_11654
Malate dehydrogenase.
   
 0.948
COLO4_04683
Uncharacterized protein.
   
 0.946
COLO4_23299
Fumarate lyase.
   
 0.944
COLO4_26822
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.943
COLO4_15876
Malate dehydrogenase.
   
 0.936
COLO4_37306
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.934
COLO4_30608
Glutamate/phenylalanine/leucine/valine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.934
COLO4_13596
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.934
COLO4_32274
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 0.930
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.