STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_17410LRRNT_2 domain-containing protein. (1180 aa)    
Predicted Functional Partners:
COLO4_17702
Translation elongation factor EF1B, gamma chain, conserved.
    
  0.515
COLO4_22865
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.512
COLO4_26893
Sm domain-containing protein.
    
 0.509
COLO4_13405
Sm domain-containing protein.
    
  0.504
COLO4_29700
Small nuclear ribonucleoprotein G.
    
  0.502
COLO4_33299
Tyrosine-protein phosphatase non-receptor type 20-like protein.
    
 0.493
COLO4_26483
Uncharacterized protein.
    
 0.473
COLO4_20695
Uncharacterized protein.
    
  0.473
COLO4_20694
Putative ankyrin-repeat containing protein.
    
  0.473
COLO4_28635
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.456
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.