Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_00185 | COLO4_15351 | A0A1R3L4D7 | A0A1R3JNP2 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.476 |
COLO4_00185 | COLO4_16621 | A0A1R3L4D7 | A0A1R3JGK6 | Uncharacterized protein. | Remorin_C domain-containing protein. | 0.505 |
COLO4_00185 | COLO4_22271 | A0A1R3L4D7 | A0A1R3IN76 | Uncharacterized protein. | E3 ubiquitin-protein ligase. | 0.429 |
COLO4_00185 | COLO4_24972 | A0A1R3L4D7 | A0A1R3I5L9 | Uncharacterized protein. | Uncharacterized protein; Belongs to the terpene synthase family. | 0.462 |
COLO4_00185 | COLO4_25636 | A0A1R3L4D7 | A0A1R3I0X8 | Uncharacterized protein. | Uncharacterized protein. | 0.506 |
COLO4_03997 | COLO4_15351 | A0A1R3KVL9 | A0A1R3JNP2 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.476 |
COLO4_03997 | COLO4_16621 | A0A1R3KVL9 | A0A1R3JGK6 | Uncharacterized protein. | Remorin_C domain-containing protein. | 0.504 |
COLO4_03997 | COLO4_22271 | A0A1R3KVL9 | A0A1R3IN76 | Uncharacterized protein. | E3 ubiquitin-protein ligase. | 0.429 |
COLO4_03997 | COLO4_24972 | A0A1R3KVL9 | A0A1R3I5L9 | Uncharacterized protein. | Uncharacterized protein; Belongs to the terpene synthase family. | 0.464 |
COLO4_03997 | COLO4_25636 | A0A1R3KVL9 | A0A1R3I0X8 | Uncharacterized protein. | Uncharacterized protein. | 0.508 |
COLO4_08221 | COLO4_15351 | A0A1R3KGS8 | A0A1R3JNP2 | Uncharacterized protein. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.465 |
COLO4_08221 | COLO4_16621 | A0A1R3KGS8 | A0A1R3JGK6 | Uncharacterized protein. | Remorin_C domain-containing protein. | 0.436 |
COLO4_15351 | COLO4_00185 | A0A1R3JNP2 | A0A1R3L4D7 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.476 |
COLO4_15351 | COLO4_03997 | A0A1R3JNP2 | A0A1R3KVL9 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.476 |
COLO4_15351 | COLO4_08221 | A0A1R3JNP2 | A0A1R3KGS8 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.465 |
COLO4_15351 | COLO4_16621 | A0A1R3JNP2 | A0A1R3JGK6 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Remorin_C domain-containing protein. | 0.510 |
COLO4_15351 | COLO4_22271 | A0A1R3JNP2 | A0A1R3IN76 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | E3 ubiquitin-protein ligase. | 0.479 |
COLO4_15351 | COLO4_24972 | A0A1R3JNP2 | A0A1R3I5L9 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein; Belongs to the terpene synthase family. | 0.504 |
COLO4_15351 | COLO4_25636 | A0A1R3JNP2 | A0A1R3I0X8 | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.483 |
COLO4_16621 | COLO4_00185 | A0A1R3JGK6 | A0A1R3L4D7 | Remorin_C domain-containing protein. | Uncharacterized protein. | 0.505 |
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