STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_15806FHA domain-containing protein. (353 aa)    
Predicted Functional Partners:
COLO4_09654
RNA helicase.
    
 0.895
COLO4_23195
Uncharacterized protein.
    
 0.887
COLO4_05452
Uncharacterized protein.
    
 0.887
COLO4_08906
Nrap protein.
   
 
 0.876
COLO4_08362
G-patch domain-containing protein.
    
 
 0.875
COLO4_31795
RNA-processing protein, HAT helix.
    
 
 0.872
COLO4_27840
Nucleolar protein 14.
    
   0.867
COLO4_21291
S4 RNA-binding domain-containing protein.
    
   0.867
COLO4_09146
Sas10/Utp3/C1D.
    
   0.867
COLO4_07227
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
   0.867
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.