STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_15556Avirulence induced family protein. (677 aa)    
Predicted Functional Partners:
COLO4_18570
Bacterial surface antigen (D15).
  
 
 
 0.642
COLO4_14474
GYF_2 domain-containing protein.
    
 
 0.554
COLO4_29888
Photosystem II PsbP, oxygen evolving complex.
  
 
   0.532
COLO4_25108
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
 
   0.515
COLO4_26556
AP2/ERF domain-containing protein.
  
 
   0.486
COLO4_22952
Zinc finger, Dof-type.
  
 
  0.473
COLO4_30434
Photosystem I PsaH, reaction centre subunit VI.
  
     0.437
COLO4_05544
Pectinesterase, catalytic.
      
 0.436
COLO4_23165
Ubiquitin.
    
  0.432
COLO4_19295
Uncharacterized protein.
      
 0.431
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.