STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_15281Uncharacterized protein. (354 aa)    
Predicted Functional Partners:
COLO4_25921
G-protein, beta subunit.
    
  0.708
COLO4_11251
Dimeric alpha-beta barrel.
   
 0.694
COLO4_09199
Chlorophyllase.
    
 0.678
COLO4_24818
Retrotransposon gag protein.
    
 
 0.610
COLO4_14341
Ubiquitin.
    
  0.603
COLO4_07087
Ubiquitin.
    
  0.603
COLO4_29274
Protein phosphatase 2A, regulatory B subunit, B56.
    
 0.600
COLO4_09485
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.587
COLO4_09482
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
    
 0.587
COLO4_13999
Leucine-rich repeat, ribonuclease inhibitor subtype.
    
 0.578
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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