STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_14588Tetratricopeptide repeat-containing protein. (49 aa)    
Predicted Functional Partners:
COLO4_12887
WD_REPEATS_REGION domain-containing protein.
   
    0.804
COLO4_34912
WD_REPEATS_REGION domain-containing protein.
   
    0.785
COLO4_26906
WD_REPEATS_REGION domain-containing protein.
   
  
 0.779
COLO4_10987
Uncharacterized protein.
   
    0.767
COLO4_37344
BP28CT domain-containing protein.
   
    0.708
COLO4_14020
Tr-type G domain-containing protein.
   
   0.679
COLO4_22854
Uncharacterized protein.
   
   0.636
COLO4_37813
WD_REPEATS_REGION domain-containing protein.
   
  
 0.633
COLO4_14499
WD_REPEATS_REGION domain-containing protein.
   
  
 0.633
COLO4_28678
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.625
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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