STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_14173Uncharacterized protein. (837 aa)    
Predicted Functional Partners:
COLO4_11028
SPla/RYanodine receptor SPRY.
   
 0.746
COLO4_05421
RRM domain-containing protein.
   
 0.727
COLO4_18047
Nuclear cap-binding protein subunit 2.
    
  0.685
COLO4_32305
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.672
COLO4_27286
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.672
COLO4_12025
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.672
COLO4_25962
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 
 0.658
COLO4_29445
Ribosomal protein S5/S7; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.652
COLO4_32536
Ribosomal protein S14.
   
   0.642
COLO4_36514
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
   0.638
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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