STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_14112EFG_IV domain-containing protein. (770 aa)    
Predicted Functional Partners:
COLO4_15493
Diphthami_syn_2 domain-containing protein.
   
 0.995
COLO4_17702
Translation elongation factor EF1B, gamma chain, conserved.
   
 
 0.957
COLO4_21927
Ribosomal protein L2.
 
 0.953
COLO4_29445
Ribosomal protein S5/S7; Belongs to the universal ribosomal protein uS7 family.
  
 0.945
COLO4_30834
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.942
COLO4_32536
Ribosomal protein S14.
  
 0.934
COLO4_10857
Ribosomal protein L6.
  
 0.929
COLO4_22799
Ribosomal protein L32e.
   
 0.928
COLO4_26388
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.923
COLO4_13264
Ribosomal protein L27.
  
 
 0.922
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.