STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_14094RNA polymerase III Rpc4. (364 aa)    
Predicted Functional Partners:
COLO4_14329
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.992
COLO4_12944
RNA polymerase Rpc34.
   
 0.992
COLO4_21559
RNA polymerase II, Rpb4.
    
 0.990
COLO4_19069
DNA-directed RNA polymerase, RBP11-like protein.
   
 0.987
COLO4_07724
DNA-directed RNA polymerase, RBP11-like protein.
   
 0.987
COLO4_06245
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.986
COLO4_05101
Uncharacterized protein.
   
 0.986
COLO4_14270
RNA polymerase, subunit omega/K/RPABC2.
    
 0.985
COLO4_24205
Uncharacterized protein.
    
 0.984
COLO4_22111
DNA-directed RNA polymerase III subunit Rpc5.
   
 0.981
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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